Browse of TCMCG006C73697 protein

CDS

Accession Number	TCMCG006C73697
gbkey	CDS
Protein Id	XP_013701891.1
Location	join(15985863..15985886,15986010..15986086,15986183..15986322,15986397..15986483,15986577..15986664,15986754..15986831,15987061..15987138,15987234..15987313,15987731..15987809,15987894..15988220,15988448..15988507,15988753..15988987,15989062..15989110,15989193..15989347,15989521..15990861,15990999..15991161,15991289..15991403,15991567..15991654,15991758..15991836,15991937..15992235,15992343..15993420,15993578..15993943,15994067..15994628,15994630..15994660)
Gene	LOC106405883
GeneID	106405883
Organism	Brassica napus

Protein

Length	1893aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA293435
db_source	XM_013846437.2
Definition	LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category	K
Description	Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K15164        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04919        [VIEW IN KEGG] map04919        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0005215        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0006810        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008643        [VIEW IN EMBL-EBI] GO:0015144        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016021        [VIEW IN EMBL-EBI] GO:0022857        [VIEW IN EMBL-EBI] GO:0031224        [VIEW IN EMBL-EBI] GO:0034219        [VIEW IN EMBL-EBI] GO:0040034        [VIEW IN EMBL-EBI] GO:0044425        [VIEW IN EMBL-EBI] GO:0050789        [VIEW IN EMBL-EBI] GO:0050793        [VIEW IN EMBL-EBI] GO:0051119        [VIEW IN EMBL-EBI] GO:0051179        [VIEW IN EMBL-EBI] GO:0051234        [VIEW IN EMBL-EBI] GO:0051239        [VIEW IN EMBL-EBI] GO:0055085        [VIEW IN EMBL-EBI] GO:0065007        [VIEW IN EMBL-EBI] GO:0071702        [VIEW IN EMBL-EBI] GO:0090213        [VIEW IN EMBL-EBI] GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTGGACTAATGTTTTCAAAATTGGAGGTCTCCGTAATGTTTCTTGGTTTCAGTTTCTTCCTAGTGAAGCTGAGCTGAGTCCTGCCTCTGATACAACAAGTTCAAGAGCTGAGCAGAATGATGTTGCAACCTATCTTGTGCTTTCATCTCATCTTCGGCTTCAGAAGGAAGGCTTTCTTAGCACATGGACCAATTCTTTTGTTGGACCTTGGGATCCTTCTCAAGGCTTATACAACCCTGATGAAAAGATCAAGCTTTGGCTTTTTCTTCCTGGGCGTCATTCATCAATCACTGATAAAGCTCAGGCTGTTGTCTCAAAACTCAGAGTTGTTGCTTCTGGAATTTGGGTAGCACCTGGGGACTCTGAAGAGATATCAGTTGCCTTTTCACAGTCTTTACGTAATTGCATTGAAAGAGCATTAACTGGACTTTCCTACATGAGATTTGGAGATGTTTTTTCAAAATTCAGCCCTCAAAGTGAAGATTATTTGAGGAGGGGACAGCCTACTGTTGAGTTCATCTTTGCTGCTACCGAAGAGGCAGTTTTTGTCCATGTCATTGTATCTGCCAAGAATGTCCGGGCACTTTCAAGTGGCGATGCTGAGAGACTGTTAAGGAGTTCTTTGAAAAACTCCAGTTATAGGCTTCCCGTGATTGTTTCTCCTCATGGTATGCGGGGCAGCCTCACTGGATTCTGTCCCAATGACCTTGTCAAGCAAGTCTACTTCAGTTCTGGAAACATTGGGACTTCGAGTGGCTATATTGGTCTCCCTTCTCATGTTGATCGTGGGTCCCGTCTGATAAATGACAATCATTGTTACGTGGAAGTTACACTTGGTTGCTGCCAAAGTATTAATGACAACACAAGTCAAACTAATTCGACCTTTGCAGTAAACTTGCCCCATAATCAGCGTCCTGAACCATCAGTTGGGAGTAGAGATCACCGGAAAGGACAACAAGATATCTCATCCGTTCGTGAAAAAAAGTTCATATATCCAGCTGAGGCAGTGCTTGTGCCAATCTTACAGTCGGCATTTGCTAAATTTTCTTTGAAAAGATTTTGGCTTCAAAACTGGATAGGACCATCACTGGCAGGTTCATCATTATATATACACTGGGCTGGTGATTTTGACTTCCTTCGATCGTCTGGAAATAAGAGTGATGGGTTTTATGAAAAAAATGGTTATAATAGCAGCGGCAGTAGCCGTAATAGCAGCATTAGTTCAACAAGTAGTGCTTCTAGCGGGAGTGGTTGGAGAATGGCTTCAAGAACTGGTGATCTTGATGCTGATGCAGATTCGTTGACGTGTAGGCAATCTGGTGTAACTTGCAATGATGATCGCCCAAAATCGGGTTCTAAGCGGTCGCGAACAGGGAGGACAGAGTCTTTCGGTCAAGTAGGCATTACAGATGATCAAATTGGCTGGGATTGGGATGATGATGATGATGATGATGATGATGATGATAGAGGAGTTGGTATGGATACCAAGGCACTTCTTTCAGAGTTTGGAGACTTTGGTGACTTCTTTGAGAATGATGCGTTGCCTTTTGGGGAGCCACCGGGAACAGCAGAGTCACATACGCTAATGATTCCTCTAGATTCTGCTGAAATAGGTTGTAGTCCAGTTGATATGATGGATGTATCAGACCAGATTGTTTTGCCCGATGGGTTTTCCTCTTTTGAGAGCTTTAATCCTGTTCCCCCGATCATAGATGAGTGCCTTATCAAAAGTCAAGAAGTCATCAACAGCAGTGTCACTTCAGCTCCTTTAAATCAAATGTCAAGCTCTTCTACTGGTGAGTTCGACCATTTGATAAAAGCAGAGGCTATGATGACCTTTGCTCCTGAGTATGGAGCTGTTGAAGTACCTATGAGCGAGATTTCCTCTTTCAAAAGCCCATATCTTCCCAAATCTCATAAAGTGGAGAGTTCACATTCAAGAACGAGTAACTATGTTTATGGACCCACACCACCGGCCACTGATTCTGATGGAGCAGCCGACAAAAATTCACTTGGATCAAAAGCGTGCATTGGTAACAATGATGGCAGAACTTTGTTTCAGTCGAGAGATTATTACACTCAAGTGGAGGGCAGAAAGGACCAACATAAGATGCTACCTACTGTAATTAGTGACAACAGTAGTACAAAGGAGGGTGTTTCTCAGTTAAAATATTCAAACTTCAGTGCTGTTAAGACCGTACAAGGGAAAAAGTCTGACGGTATATCTGCTGTTGTTAGTACTTTATTATCTTCAAAGACCTTGTTGGCAACAGACGTGGGAAGCGTTATGTTCCAAGCTTTCATGTCTAGGATGCGGCACATAATCATTTCTTCGAAGCACAGTTCACCAGTTAATCTGACAAGGCTTAGTGGAAAGCTATTCCTGAACCAGCTGTCAAATGAGCCCAGTAGTCTGACAGACAATATATCTGCAAGAAACGAGATATATAAGAAAGAAATACCTACTAGAATAGCTGGAGATTTTGACGGAGGAATGATAGATAGCCACATGAGTGCACCAGTTGGCGTGTGGCGGACTGTTTCAGTCCCAAAAACAGCAAAACCTGCTAGTTCGCCAAATATTGAAGCAGGCTCATCCTTGCCCCATAGTTCATTTAGCGAAGATAGCTTGCTTTCTTATGGCCAAAGACAGCCATTGCAGGAACTCCTAGATGGAATAGCGCTAATTGTACAGCAAGCTACTTCTTTTGTTGATTTAGCTCTGGATTCAGATTGTGGAGATGGTCCTTATGGCTGGCTTGCCCTGGAAGAGTTATGGAGACGGGAACTTTCGTGTGGGCCCTCTGCTGGCCATGCAGGTTGTGGGGGAACTTTGGCTTCCTGCCATTCTCTGGACATTGCTGGTGTCAAGCTAGTTGACCCACTCTCTGCAGAGGTTTTTCCTTCGTCTGTCATTACTCTGCTGCAATCTGACATTAAAACAGCTCTGAAATCTGCATTTGGTCAGTCAGATGGTCCATTATCTGTCACAGATTGGTGCAAGGGCCGAAATCACTCAATGGATGGGGGATCTACTGCTGAGTCATCCCTGCGTGAAGCGATGTCAATAGATAGTGGGAAACGAGAGGAGACTGCTCAGAGCCAAGACATATACAGTTCAGAATTACTCCGACCGACACTTTTTGTTCTTCCGTCACCTTCTATACTTGTCGGGTACCAAGATGACTGGCTTAAGATATCAACTAACGCCTTGCCACATTGGGAAAAGGCCCCTTTCGAGCCATATGCTCTGCCGAAAAATATGAGCTATACTGTTGTATGCCCGGATATAGATCCTTTAACCAGTGCTGCTACTGATTTCTTCCAACAACTTGGAACTGTTTATGAGGCGTGCAGACTGGGAACTCATTTGCCACATATCCTGGGAAATCAAATGGAAACTGACGCTGGAAGACTATCCTTGTCTGGATTTGTTCTGCTTGATTGCCCTCAATCGATGAAGATTGAAAGCAATAACACATCGCTTCTGGGATCTCTCAGCGATTATTTTCTATCTTTGTCGAATGGGTGGAATGTGACTAGCTATCTGAAGTCTTTATCAAGAGCGCTGAAAGGTCTAAAGCTTGAGTCTTGCCTTTACACAAACCAGAAAGAAGGATCAGCTACGAGTCCTTGCATCGTAGTGTACATAGTGTGTCCATTTCCCGATCCTTCGGCAGTTTTAAGGACGATCGTCCAATCGTCTATTGCACTTGGATCAGGAATACGGCCAGATAAAGACAGGAGATCGTTACTTAACAGTCAGGTTGCAAGGGCGTTTGGTAGTTCTGCTGCTGTAGACGAAGCATCAATATCTCATATTCCAGTGCTTTCGGGGTTTAGTGTCCCTAAACTAGTTCTACAGGTGGTGTCTGTTGATTCTATTTTTCGGATAACAAGTCCGAGCTTTAATGAGCTTGTCATTCTCAAGGATACTGCCTTTTCTGTATACAATAAGGCGCGTAAAATCTCACGAGAAATGCCTAATGATGCATTTCAGTCGTCCTCTTTATCAAGCAGATCGTCTTCAGCCTTGACACCAATGAGCTCTATTTCAGGAATCTGGAAAGACTGTGTTGGTTCTCGAATGACAGGTTCTACACATCCAAGAGATGGTGAAAGGGATGGTAGCATGAGAACGAGTTGGGATAGCTGGCAAATGACAAGATCTGGAGGATTAAGCTGCGACCCAAACAGAAATGAAGATTTTTACCTTAATGATGAAAGTTTCTATTTATTTGAACCGCTTTTCATTCTTTCGGAGCCTGGTTCAGTGGAACGTGAACTTTCACCTACTTTTGGCGGCTTAGGTTCAGAGTCTTCAAAGCCAATAACTGAGGATGGTGGCAGAGGTTCTGGACTTGGCGTCAATGCAATGGAAGGCATACCATCAGGATCAAGCTCACAGGGGGATACATCCCAGGTTGAAGGAAAGAATATTCCAAGTTTACATTGCTGCTACGGTTGGACAGAGGACTGGCGATGGCTTGTAAGCATCTGGACAGATGCCAGGGGCGAACTGCTTGACACACATATATTTCCCTTTGGTGGAATTAGTAGTAGACAGGATACGAAAGGGCTGCAGTGTCTCTTTGTTCAAGTTCTGCAGCAAGGATGCCAAATCCTACAGGCATGTTCCTCCCCTGACAATGGATCTTCAAAACCCAGAGATTTTGTCATTACACGCATTGGCAATTTCTTTGAGCTTGAATACCTAGAGTGGCAAAAGGCAATATACTCAGCTGGAGGTCCTGACATTAAAAAGTGGCCTATTCAACTTCGACGTTCTGCACCTTCTGGCATAGCCACCAATTGCAGCGTATCTTCCTTGCAACCGCCGGATATGAGTTTGATTCAAGAGAGAGCCTCGTCAAGTAGCACATTCTACAGCTCTCACTCAAAACCATCCAACTTCGTGAAAGGCAGTATAGGGCAATCTGCTGGAAGAAAGCATATAATGGGTGGACAAACCATTTCTGGTACTCCAAGGGGTTTGTTTCAGTGGGTTCACAGCATCAGTTTTACTTCTATTTCACTTGATCAATCTCTGCATCTTGTTCTTCCGGTTGAGTTGGTATCTCCTGGAGGTACTGGTATGAGTTCATCAAATTACATTGAAGGTTTCACTCCTGTCAAATCTCTTGGGTCAACGGCTTACTCGTACATGATGATACCATCACCCAACATGCGCTTTCTTCACCCAAGTCCTCTTCAGCTTCCTACATGTTTAACTGCCGAATCACCTCCGCTTGCTCACCTTCTTTACAGCAAAGGCTGTGCAATACCCTTGTCTACCGGGTTTGTTGTTTCAAAAGCAGTGCCTTCCATGAGAAAAGACTCGAGAATAAATATGAAAGAAGAATGGCCATCAGTTCTCTCTGTTAGTCTCATTGACTACTATGGTGGTTATGACAACGCTCATGACAAAATTCTTCATGGAATCATGAAGCAAGGCGGTGGAGGGACCCAAGAAACTAGAGATTTTGAGGTTGAAAGCCATCTTATCCTTGAGTCAATTGCGGCAGAACTCCACGCTCTATCATGGATGACTGCAAGTCCAGCATATCTGGATAGGCGGACGGCATTGCCTTTTCACTGTGATATGGTTCTCAGACTGAGACGTCTTCTTCATTTCGCGGATAAAGACTCCAGACTTCCAGATAAACCAGGACTTTGA

Protein:   MWTNVFKIGGLRNVSWFQFLPSEAELSPASDTTSSRAEQNDVATYLVLSSHLRLQKEGFLSTWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGRHSSITDKAQAVVSKLRVVASGIWVAPGDSEEISVAFSQSLRNCIERALTGLSYMRFGDVFSKFSPQSEDYLRRGQPTVEFIFAATEEAVFVHVIVSAKNVRALSSGDAERLLRSSLKNSSYRLPVIVSPHGMRGSLTGFCPNDLVKQVYFSSGNIGTSSGYIGLPSHVDRGSRLINDNHCYVEVTLGCCQSINDNTSQTNSTFAVNLPHNQRPEPSVGSRDHRKGQQDISSVREKKFIYPAEAVLVPILQSAFAKFSLKRFWLQNWIGPSLAGSSLYIHWAGDFDFLRSSGNKSDGFYEKNGYNSSGSSRNSSISSTSSASSGSGWRMASRTGDLDADADSLTCRQSGVTCNDDRPKSGSKRSRTGRTESFGQVGITDDQIGWDWDDDDDDDDDDDRGVGMDTKALLSEFGDFGDFFENDALPFGEPPGTAESHTLMIPLDSAEIGCSPVDMMDVSDQIVLPDGFSSFESFNPVPPIIDECLIKSQEVINSSVTSAPLNQMSSSSTGEFDHLIKAEAMMTFAPEYGAVEVPMSEISSFKSPYLPKSHKVESSHSRTSNYVYGPTPPATDSDGAADKNSLGSKACIGNNDGRTLFQSRDYYTQVEGRKDQHKMLPTVISDNSSTKEGVSQLKYSNFSAVKTVQGKKSDGISAVVSTLLSSKTLLATDVGSVMFQAFMSRMRHIIISSKHSSPVNLTRLSGKLFLNQLSNEPSSLTDNISARNEIYKKEIPTRIAGDFDGGMIDSHMSAPVGVWRTVSVPKTAKPASSPNIEAGSSLPHSSFSEDSLLSYGQRQPLQELLDGIALIVQQATSFVDLALDSDCGDGPYGWLALEELWRRELSCGPSAGHAGCGGTLASCHSLDIAGVKLVDPLSAEVFPSSVITLLQSDIKTALKSAFGQSDGPLSVTDWCKGRNHSMDGGSTAESSLREAMSIDSGKREETAQSQDIYSSELLRPTLFVLPSPSILVGYQDDWLKISTNALPHWEKAPFEPYALPKNMSYTVVCPDIDPLTSAATDFFQQLGTVYEACRLGTHLPHILGNQMETDAGRLSLSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVTSYLKSLSRALKGLKLESCLYTNQKEGSATSPCIVVYIVCPFPDPSAVLRTIVQSSIALGSGIRPDKDRRSLLNSQVARAFGSSAAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKDTAFSVYNKARKISREMPNDAFQSSSLSSRSSSALTPMSSISGIWKDCVGSRMTGSTHPRDGERDGSMRTSWDSWQMTRSGGLSCDPNRNEDFYLNDESFYLFEPLFILSEPGSVERELSPTFGGLGSESSKPITEDGGRGSGLGVNAMEGIPSGSSSQGDTSQVEGKNIPSLHCCYGWTEDWRWLVSIWTDARGELLDTHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDNGSSKPRDFVITRIGNFFELEYLEWQKAIYSAGGPDIKKWPIQLRRSAPSGIATNCSVSSLQPPDMSLIQERASSSSTFYSSHSKPSNFVKGSIGQSAGRKHIMGGQTISGTPRGLFQWVHSISFTSISLDQSLHLVLPVELVSPGGTGMSSSNYIEGFTPVKSLGSTAYSYMMIPSPNMRFLHPSPLQLPTCLTAESPPLAHLLYSKGCAIPLSTGFVVSKAVPSMRKDSRINMKEEWPSVLSVSLIDYYGGYDNAHDKILHGIMKQGGGGTQETRDFEVESHLILESIAAELHALSWMTASPAYLDRRTALPFHCDMVLRLRRLLHFADKEXSRLPDKPGL